rs227440089 SNP Detail

Summary

• ID
  rs227440089
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69556750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCATTCCC ATGACTGGTG
  GTGGTGGCAG GGTTATGAGT GACAGTTGTG GGTCCGGAGC TGGTGTGAAC TGTGACATTT
  CCGTGACTGG TGGTGGTGGG CCTGTGGCTG GTCGTAGGGC TGGCTGTGCT TTCTGTGGCT
  GTAGGTGTCA TCGTGAAGGA TGGCAGGAGA GTAACGGCCT TTTTGTGAGG ACAGTCTTCC
  Y
  CTGTTCCTTG GGCTTTCAGT AAGAGATTGG TTGGCCACCC AGGTGCAGGC TCCTGCCCAT
  GAGCCCTCCC TCCCCCACCT CCCATTTCTC CTTACCTATA AGCGGTCCTA GCAAGATCAG
  ACACACAGGG AGCCGCATGG CAGAGATGCT CAGACCAGCT AGGCTACACC AGTTCCTTCC
  TCAATCCAAT CCCCTTTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383788474	MGP_WTSI_11_69479426	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227440089					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383788474	MGP_WTSI_11_69479426	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69556750 () rs orientation: forward

Symbol	Name	Function Class
Cd68	CD68 antigen	within coordinates
Eif4a1	eukaryotic translation initiation factor 4A1	1012 bp downstream
Gm24029	predicted gene, 24029	1910 bp downstream
Gm73992	predicted gene, 73992	within coordinates
Rr450060	regulatory region 450060	1745 bp distal
Rr450061	regulatory region 450061	128 bp proximal
Tssr102508	transcription start site region 102508	1740 bp downstream
Tssr102509	transcription start site region 102509	1705 bp downstream
Tssr102510	transcription start site region 102510	1571 bp downstream
Tssr102511	transcription start site region 102511	1536 bp downstream
Tssr102512	transcription start site region 102512	288 bp downstream
Tssr102513	transcription start site region 102513	250 bp downstream
Tssr102514	transcription start site region 102514	220 bp downstream
Tssr102515	transcription start site region 102515	82 bp downstream
Tssr102516	transcription start site region 102516	548 bp upstream
Tssr102517	transcription start site region 102517	578 bp upstream
Tssr108748	transcription start site region 108748	1542 bp upstream
Tssr108749	transcription start site region 108749	1465 bp upstream
Tssr108750	transcription start site region 108750	1436 bp upstream
Tssr108751	transcription start site region 108751	1407 bp upstream
Tssr108752	transcription start site region 108752	994 bp upstream
Tssr108753	transcription start site region 108753	804 bp upstream
Tssr108754	transcription start site region 108754	604 bp upstream
Tssr108755	transcription start site region 108755	559 bp upstream
Tssr108756	transcription start site region 108756	529 bp upstream
Tssr108757	transcription start site region 108757	338 bp upstream
Tssr108758	transcription start site region 108758	99 bp upstream
Tssr108759	transcription start site region 108759	81 bp upstream
Tssr108760	transcription start site region 108760	19 bp upstream
Tssr108761	transcription start site region 108761	141 bp downstream
Tssr108762	transcription start site region 108762	154 bp downstream
Tssr108763	transcription start site region 108763	238 bp downstream
Tssr108764	transcription start site region 108764	1301 bp downstream
Tssr108765	transcription start site region 108765	1446 bp downstream