rs227444401 SNP Detail

Summary

• ID
  rs227444401
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:183849060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCA AGGCCTGAAA TCTCCACTTG
  Y
  TTGTGGTGTG CCCAGCCTCC CCTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320165978	CHEV_1_185940742	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227444401					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:183849060 () rs orientation: forward

Symbol	Name	Function Class
Gm69596	predicted gene, 69596	1411 bp upstream
Rr425179	regulatory region 425179	1160 bp proximal
Rr425180	regulatory region 425180	1422 bp proximal
Tssr10581	transcription start site region 10581	1409 bp upstream