rs227444658 SNP Detail

Summary

• ID
  rs227444658
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:42454225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTGCCCG AGTAAAGAAG
  CAAAGTGATG TGGAGGAGAC TCTGGAAAGT CGGGGAAGGG AATAATGGAA TGCCCTGAAG
  CCACCTCTCT TTAGTATGTG AGGCGCCCCT TCTCTGCCTG GCCACAGCTT GTTACTAATC
  ATTTAGAAGC CGAGGCTTTA GTTGTTTTAT CTTATTAAAG CATAAGCCCC TGCAGCTCTC
  Y
  ATCTCCCCCT GGCGGTCGTC TCTGCCATTT CTCAAGATCC TTCGCGATAG CAGCAATTCC
  CAGGGAGAGG CTGGGCACAA GAAATATTGG AGGGCGAGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TACGTGTACT TCTGATCGGC GATACTAGGG AGATAAGGAT
  GTACCTGACA AAACCACATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388408432	MGP_WTSI_13_42396118	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227444658					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388408432	MGP_WTSI_13_42396118	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:42454225 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5505	CpG island 5505	801 bp proximal
D13Mit138	DNA segment, Chr 13, Massachusetts Institute of Technology 138	56 bp proximal
Edn1	endothelin 1	727 bp upstream
Gm47118	predicted gene, 47118	1549 bp downstream
Gm60910	predicted gene, 60910	within coordinates
Rr388326	regulatory region 388326	within coordinates
Rr478143	regulatory region 478143	1660 bp distal
Rr478144	regulatory region 478144	within coordinates
Rr478145	regulatory region 478145	within coordinates
Rr478146	regulatory region 478146	594 bp proximal
Rr478147	regulatory region 478147	1884 bp proximal
Tssr119437	transcription start site region 119437	516 bp upstream
Tssr119438	transcription start site region 119438	675 bp upstream
Tssr119439	transcription start site region 119439	697 bp upstream
Tssr119440	transcription start site region 119440	760 bp upstream
Tssr119441	transcription start site region 119441	863 bp upstream
Tssr119442	transcription start site region 119442	1033 bp upstream
Tssr119443	transcription start site region 119443	1074 bp upstream
Tssr119444	transcription start site region 119444	1204 bp upstream