rs227445374 SNP Detail

Summary

• ID
  rs227445374
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:23790363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tggaggcat ttcctcaact gaagctcctt
  tctctgtgat aactccagct gtgtcaagtt gacacaaaac tagccagtac acccatacac
  atggtttcag aGAATATGAG TATAGAACTG GGTTTGTTTT GGGGTTGTTt ttgtttgttt
  K
  tttgtttgtt ttttgttttt tcgagacagg gtttctctat gtagccctgg ctgtcctgga
  actcacacgc ctgcGCCACA ATGCCCGGCC AGGCTTGGTT TTTCTTATCT CTCAATCCAC
  TACCCCACAT TATTATTTAA AAGTCTCTCA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321489802	CHEV_5_23091183	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227445374					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23790363 () rs orientation: forward

Symbol	Name	Function Class
Rr112219	regulatory region 112219	1963 bp distal
Rr117577	regulatory region 117577	1438 bp proximal
Srpk2	serine/arginine-rich protein specific kinase 2	within coordinates
Tssr1438	transcription start site region 1438	1429 bp upstream
Tssr50280	transcription start site region 50280	1255 bp downstream