rs227446650 SNP Detail

Summary

• ID
  rs227446650
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69573549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTCTCACCA TTGTAACCCC TGGGTGGCCT GGAACTCACT
  ATTTAGACCA AGTTGGCCTC GAACTCATCG AGATCTGCCT CCCGAGTACT GTGATTTAAG
  R
  CGTAAAGCTC AGTGCCCAGC TCGGAAGTGT ATAGGAGAAT GGGGAGGATG AATGGCATGC
  ATATCGAGGC ACCTAACATA TATCTTTTTC TAGATAGTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323731045	CHEV_11_69496225	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227446650					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69573549 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3142	CpG island 3142	430 bp distal
Rr450067	regulatory region 450067	888 bp distal
Rr450068	regulatory region 450068	665 bp distal
Rr450069	regulatory region 450069	149 bp distal
Rr450070	regulatory region 450070	219 bp proximal
Rr450071	regulatory region 450071	1110 bp proximal
Senp3	SUMO/sentrin specific peptidase 3	639 bp upstream
Tnfsf13	tumor necrosis factor (ligand) superfamily, member 13	123 bp downstream
Tnfsf13os	tumor necrosis factor (ligand) superfamily, member 13, opposite strand	within coordinates
Tnfsfm13	tumor necrosis factor (ligand) superfamily, membrane-bound member 13	within coordinates
Tssr102519	transcription start site region 102519	1600 bp upstream
Tssr102520	transcription start site region 102520	1632 bp upstream
Tssr102521	transcription start site region 102521	1673 bp upstream
Tssr102522	transcription start site region 102522	1766 bp upstream
Tssr102523	transcription start site region 102523	1828 bp upstream
Tssr108774	transcription start site region 108774	919 bp upstream
Tssr108775	transcription start site region 108775	867 bp upstream
Tssr108776	transcription start site region 108776	827 bp upstream
Tssr108777	transcription start site region 108777	770 bp upstream
Tssr108778	transcription start site region 108778	742 bp upstream
Tssr108779	transcription start site region 108779	718 bp upstream
Tssr108780	transcription start site region 108780	644 bp upstream