rs227449067 SNP Detail

Summary

• ID
  rs227449067
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132458409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTGCAAT ACAATTGCCA
  GCACCAGTGT GAGCTGTGGC GTCGCCTCCA GGAAGCTCTC GAAAAGCTTC AGCATGCTGA
  TGTCCAGGGA GAGAAAGTCT GCGTAGGCCA GGTCACACTC GGATGGCATC TCCTGGTAGC
  ACATGGACAG CCCTTGATGC ATTCCGTGCA AACACCTAGG CAGGACACAC AGGTGCCCGG
  R
  GGGCCAGGTC AACCTTCTGT GACGTCGTCC ATCTCCTACA GCTGAGTGCA CAGAGGCAGA
  CTTCAATCCT AGCTTGTCAC TTAAAAGCTA CGGAACCTGG AGCAAGCCAC CTAACTAACC
  TCATGGAACT TGCTTCCTCG TCCGTAAAGT GGGGCAAACT CAACTTCTAC TCTTGCTGGT
  CAGGTACGAT CCCAGGCGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321335954	CHEV_4_132287013	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227449067					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132458409 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14969	CpG island 14969	1103 bp proximal
Rr398540	regulatory region 398540	1459 bp upstream
Rr601049	regulatory region 601049	1336 bp proximal
Rr601050	regulatory region 601050	1421 bp proximal
Rr601051	regulatory region 601051	1438 bp proximal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	1868 bp downstream
Tssr39417	transcription start site region 39417	728 bp upstream
Tssr43695	transcription start site region 43695	612 bp downstream
Tssr43696	transcription start site region 43696	1329 bp downstream
Tssr43697	transcription start site region 43697	1416 bp downstream
Tssr43698	transcription start site region 43698	1467 bp downstream
Xkr8	X-linked Kx blood group related 8	within coordinates