rs227450003 SNP Detail

Summary

• ID
  rs227450003
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13821593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAGAAGA CCCATTTGTC
  ATCCATGAGG TTGGAGTGGT TGCCTTTCAG AATGGAGAGT AAGTACCTGA GGGCTTCCAC
  CTGGTGTGGG CTCTTTGAAG TGGGGCCTTG GCTCTTAAAA CTCCACTGAC CAGAGCTGCT
  CTTCATTGGA TTTTTGTTTT ATAAAAATGA GTTAATTCAT TTTTATTTTA AATGTATTAT
  Y
  TTATGAGGCA GGGATGAATT CAAAAGTAGA AATTCTCATG GTAATCCCCT AAAACACTAA
  ACCATATTGT CCTTCTCCTT TAATATGGGC TGCACAAACT CCAGTACCCA CCATGTGGTC
  TGGACAACAT CTTCTTTGTC AATTAGATTT TAGATTCACA CAGTTTCACA TTTTGAAATT
  AAAAAGGTCA TTGGCAGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322509742	CHEV_8_13771593	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227450003					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13821593 () rs orientation: forward

Symbol	Name	Function Class
Cdc16	CDC16 cell division cycle 16	within coordinates
Gm46032	predicted gene, 46032	within coordinates
Tssr76425	transcription start site region 76425	204 bp downstream