rs227450271 SNP Detail

Summary

• ID
  rs227450271
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:179787696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCGCGGGC GGCGCGGGCG
  CGAGCGGCGC GGGCGGGAGG GCGGGCGGGG GAGGCGGGCA GAGGAGGAAG GGAGTGGTTG
  GGAGCCGGGC TGCGGCAGCC TCAGGTCTCC TCAGCGGCGG CAGCGCCCCC TCCTCCCGCG
  CCTCAGCCGC CTGCGTCCGT CGGGAAAGAT GCCCTCAGCC CAAGGCTGGG AAGAAGGGAC
  Y
  CGAGTCGCCG CCCGAACCGC GGCTGCCGCC CGCGTCCTCT GAATTCGTCA GCGCAGCCCC
  TCGCCGAGGG GCGGCGGCGG CGGCGGCCGC AGGGCGCGAG CGGGAGCCCG GGCGCTGCGC
  CCGGCGGCAC GGCGCGGCCC GCCAGCGGCC TCCGGCATGG AGCGGGCTCG CGCGGCCAAG
  TAGCCGCCGC CCCCGGAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352575971	MGP_WTSI_1_181890262	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227450271					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352575971	MGP_WTSI_1_181890262	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:179787696 () rs orientation: forward

Symbol	Name	Function Class
Cdc42bpa	CDC42 binding protein kinase alpha	341 bp upstream
Cpgi1100	CpG island 1100	within coordinates
Rr29078	regulatory region 29078	within coordinates
Tssr10433	transcription start site region 10433	150 bp downstream
Tssr10434	transcription start site region 10434	51 bp downstream
Tssr10435	transcription start site region 10435	643 bp upstream