rs227450461 SNP Detail

Summary

• ID
  rs227450461
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81003037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCCAGTAT GCCAGGCAGC
  AGAGAAACTC TACAAGGCGA TTCACAGGTT AGAGATGGGT TAGAGTGAGA CAGGATCACT
  GGAGGCTGAA GTGAAGAGGT ACCCCAGAGC TGACAAGTGG GGAGCGGGAC TCGAGGGCTG
  AGTCTCTAAA ATGAACTTGG GCACTTATAG TTGGCCTGAG TCTGGAGTCA GAAGGTGTCA
  K
  TCTGAGCCCC GAGAATCAGA GGACTTGTGG CAATCCCTGT AGACCTTCCC CATGCAGGCC
  TGTGGGGGAG GAAAGAGGGG GGGCACCCGG ACCTGAGTCC TACTCGTTGC CTTGGAAACC
  TGATGGCGAA GTCACTTTGC ATTCCTTCGG CTTCCCAGAC CACAGAAGGA CCCCCAGTTA
  TGTCCCAACA GAGCTAACCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381031898	MGP_WTSI_10_80629948	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227450461					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381031898	MGP_WTSI_10_80629948	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81003037 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1946	CpG island 1946	within coordinates
Cpgi1947	CpG island 1947	1676 bp proximal
Pias4	protein inhibitor of activated STAT 4	within coordinates
Rr402075	regulatory region 402075	538 bp upstream
Rr402076	regulatory region 402076	1599 bp upstream
Rr435533	regulatory region 435533	within coordinates
Rr435534	regulatory region 435534	710 bp proximal
Rr435535	regulatory region 435535	1530 bp proximal
Tssr94693	transcription start site region 94693	819 bp upstream
Tssr98565	transcription start site region 98565	507 bp downstream
Tssr98566	transcription start site region 98566	567 bp downstream
Tssr98567	transcription start site region 98567	635 bp downstream
Tssr98568	transcription start site region 98568	693 bp downstream
Tssr98569	transcription start site region 98569	1677 bp downstream