rs227451276 SNP Detail

Summary

• ID
  rs227451276
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5774870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCTGTTC TCAGAGACCC
  CTATTTATGG AATGTTGTCT CCACTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT
  TTTTTTTGGT TTTTCGACAC AGGGTTTCTC TGTATAGCCC TGGCTGTCCT GGAACTCACT
  CTGTAGACCA GGCTGGCCTC GAACTCAGAA ATCCGCCTGC CTCTGCCTCC CAAGTGCTGG
  R
  ATTAAAGGCG TGCGCCACCA CGCCCGGCGG AATGTTGTCT CAAAATCTGA AATTGTAGGC
  CATTTGCACA TTCAACACTG GGAAATAGAC TACTGAAAAC CAATGCTACA ATACATGGAA
  GGGAGGATAA TTCAACAGAA AGAGGAAACC ATAAAGATCA ATTTACCCCA GCCAATTTCA
  CATTAAAATG AAATACATAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324223069	CHEV_13_5724117	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227451276					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5774870 () rs orientation: forward

Symbol	Name	Function Class
Gm35330	predicted gene, 35330	226 bp upstream
Gm57599	predicted gene, 57599	601 bp upstream
Rr387902	regulatory region 387902	164 bp downstream
Rr474521	regulatory region 474521	1362 bp distal
Rr474522	regulatory region 474522	158 bp distal
Tssr121308	transcription start site region 121308	413 bp upstream