rs227453628 SNP Detail

Summary

• ID
  rs227453628
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58279135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCCTGGCTC ACGTGTAATT GCTATCATTG
  TCAAAGCTCT CACCACAGTg gtgagcctac acaggtgctt actgttacct aagtccccag
  tttacctcag ggtcactcct gatgtagtgc attccaCCAT GACAGTGTAA CATAGAGGAC
  R
  GTCTTGTCCT GAAAGACGTC TGTGAGCACC TGCTCAGGCT TTGCTTGTGC CCAACTCTCT
  GGCAGCCACT GGTCTCTCTT TTTTTTTTTT TAACTGCCTC TATAAACTTT CATATCTCAG
  AATTTCTGct ttctctccct ctcactttct                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323690072	CHEV_11_58201811	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227453628					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58279135 () rs orientation: forward

Symbol	Name	Function Class
Lypd8	LY6/PLAUR domain containing 8	within coordinates
Tssr3508	transcription start site region 3508	1998 bp downstream
Tssr101739	transcription start site region 101739	1548 bp downstream
Tssr101740	transcription start site region 101740	1503 bp downstream
Tssr101741	transcription start site region 101741	1485 bp downstream
Tssr101742	transcription start site region 101742	1779 bp upstream
Tssr101743	transcription start site region 101743	1848 bp upstream
Tssr101744	transcription start site region 101744	1930 bp upstream
Tssr101745	transcription start site region 101745	1959 bp upstream
Tssr108157	transcription start site region 108157	1505 bp upstream
Tssr108158	transcription start site region 108158	1473 bp upstream
Tssr108159	transcription start site region 108159	1842 bp downstream
Tssr108160	transcription start site region 108160	1855 bp downstream
Tssr108161	transcription start site region 108161	1920 bp downstream
Tssr108162	transcription start site region 108162	1949 bp downstream