rs227472671 SNP Detail

Summary

• ID
  rs227472671
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:4263547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCCTGGC AGCCCTCTGG
  AGAGGGAGGA AGGAGGAGGA AAGGAGACCC TCCTGGGAGG GTCTAGGCTT ATGGGTCCCC
  TAGGTCTCCC ACTCAGAAAG TCCCAACCCA GGCCTGAGGG GAAGGAGGGA GAATGCTCTT
  AGCCAAACCA CCCCTACCTC ACCACCGGAA AAACCAACAA CCCAAACCCC CAAAGGGAAG
  M
  GGATGCCAAA TGTCTCGATG GGGAAGCTTT TCACTAACGG GATGCTGGGT CTATCCATGG
  CCTTGAATCT TCGAGTTCCC GCTGAGTCAC CCGTGAAGCC TCTGGTGTTG AAACTGGTCC
  GGTGCCTTGT GCTGATTAAT GAATTACAAA TCCCCCACCC ATGTGCACTC TCCCTGGTCA
  CCGGGAAGAA TGAAAACCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401632950	MGP_WTSI_19_4213493	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227472671					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401632950	MGP_WTSI_19_4213493	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4263547 () rs orientation: forward

Symbol	Name	Function Class
Clcf1	cardiotrophin-like cytokine factor 1	932 bp upstream
Cpgi10392	CpG island 10392	661 bp proximal
Gm45928	predicted gene, 45928	864 bp upstream
Gm55500	predicted gene, 55500	1909 bp downstream
Gm59210	predicted gene, 59210	within coordinates
Rr358111	regulatory region 358111	947 bp distal
Rr363316	regulatory region 363316	within coordinates
Rr405789	regulatory region 405789	672 bp upstream
Tssr154300	transcription start site region 154300	858 bp upstream
Tssr154301	transcription start site region 154301	874 bp upstream
Tssr154302	transcription start site region 154302	890 bp upstream
Tssr154303	transcription start site region 154303	923 bp upstream