rs227476221 SNP Detail

Summary

• ID
  rs227476221
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102246115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTGCTTT ATTTTTTAAG
  GGAGGAAGAA CAATTAGCTT GTCTGGGAAG GGTCCAAGAA GCAACAAGAC TGCATGTGCA
  GGTATATGCT TCCAGGCGTT GTGGGGAACA TGAGAATTCT GGAGATAGCC ATTAAGTAAT
  AAGAAGGTTA ATAAAAAGGG CTTGAGGAGT TAGTGACAGG GATAGCATTT GCCTAGCATG
  Y
  AAGAGGTTTG GACCGCAGCA CAGTAAATAA GTAAATAAAA AAAAAATCTT CTTAAAAGAT
  CTACAGAGAG CCAGGCATGG TGGCTCAAGC CTTTAATCCC AGCACTTGGG AGGCAGAGGC
  AGGCGGATTT CTGAGTTCGA GGCCAGCCTG GTCTACAAAG TGAGTTCCAG GACAGCCAGG
  GCTATAGAGA AATCCTGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384501133	MGP_WTSI_11_102216603	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227476221					SNP	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384501133	MGP_WTSI_11_102216603	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102246115 () rs orientation: forward

Symbol	Name	Function Class
Rr245874	regulatory region 245874	1085 bp proximal
Slc4a1	solute carrier family 4 (anion exchanger), member 1	within coordinates
Tssr111045	transcription start site region 111045	2000 bp upstream
Tssr111046	transcription start site region 111046	1976 bp upstream
Tssr111047	transcription start site region 111047	1945 bp upstream
Tssr111048	transcription start site region 111048	914 bp upstream
Tssr111049	transcription start site region 111049	825 bp downstream
Tssr111050	transcription start site region 111050	877 bp downstream
Tssr111051	transcription start site region 111051	921 bp downstream
Tssr111052	transcription start site region 111052	1148 bp downstream
Tssr111053	transcription start site region 111053	1205 bp downstream
Tssr111054	transcription start site region 111054	1539 bp downstream
Tssr111055	transcription start site region 111055	1600 bp downstream
Tssr111056	transcription start site region 111056	1795 bp downstream
Tssr111057	transcription start site region 111057	1872 bp downstream