rs227476326 SNP Detail

Summary

• ID
  rs227476326
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:115923268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGTCTGCT CTTTATAAAG GGTCTTGCTA
  GAGAGGCGGA GGGAAATCCC TTCAAGGGGA AACCCAGAGC CAGGGAAAAA GTTTAACTGA
  CAGCCAGCCA AGTCCCCACG TTAACCCCTT CAGCTGCTTT CTGGGCTGAA GTCATTCTGA
  S
  TCCTGGGAAA CACGACACTT CCAAGTATAT AAATCTCTGG CTTTTCCTGA CCTTCAGCTC
  CGAAAGGGCT ATCTCTCCTG AAAAGATGAT TGCAAAATGA AACTGCCAAC Agtgtgtgtg
  tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320894372	CHEV_3_115832537	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227476326					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115923268 () rs orientation: forward

Symbol	Name	Function Class
D3Mit215	DNA segment, Chr 3, Massachusetts Institute of Technology 215	837 bp proximal
Gm43109	predicted gene 43109	within coordinates
Rr583656	regulatory region 583656	1969 bp distal
Rr583657	regulatory region 583657	within coordinates
Tssr35297	transcription start site region 35297	232 bp upstream
Tssr35298	transcription start site region 35298	155 bp upstream
Tssr35299	transcription start site region 35299	within coordinates
Vcam1	vascular cell adhesion molecule 1	mRNA-UTR