rs227478079 SNP Detail

Summary

• ID
  rs227478079
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41491622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCAAAAG GGAGAGAAAA
  AAGGAGAGAC CATGAGCTGA ACCAAGGACT GTGTATGAGC TGAACCTACA GAGGTGAGGA
  AAAAAAGAAA AGTTTTGTAT GTGTCTGTGG TGTGTGTCTG TCTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TTGGGGAGGT GTTCTAAACA GACCATGTAG
  W
  GAAGGAAAAG ACACGGTTTA GCGGGCTGGC TGGCTGGCAT GATTGTAGTT CTTCTGGTGA
  GGAGGGGGTG AGCCTGGAGC TCTTAACTGT TTCTAGTTGT ATATGAAAGC ATATTTAAAA
  TAGTTAGCTA TTTTCCTTTT CTTTTTATTT ATTATTATTA ATTTTTTTTT ATTCTGAGTC
  TAAGGGCCCC CTCCAGTGTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377342615	MGP_WTSI_9_41388409	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227478079					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377342615	MGP_WTSI_9_41388409	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41491622 () rs orientation: forward

Symbol	Name	Function Class
Gm28119	predicted gene 28119	1582 bp upstream
Gm51670	predicted gene, 51670	1055 bp upstream
Gm69589	predicted gene, 69589	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Mir125b-1	microRNA 125b-1	1600 bp upstream
Rr677060	regulatory region 677060	822 bp distal
Rr677061	regulatory region 677061	338 bp distal
Rr677062	regulatory region 677062	within coordinates
Rr677063	regulatory region 677063	1026 bp proximal
Rr677064	regulatory region 677064	1140 bp proximal
Rr677065	regulatory region 677065	1356 bp proximal
Rr677066	regulatory region 677066	1687 bp proximal
Rr677067	regulatory region 677067	1814 bp proximal
Tssr84512	transcription start site region 84512	657 bp downstream
Tssr84513	transcription start site region 84513	609 bp downstream
Tssr84514	transcription start site region 84514	434 bp downstream
Tssr84515	transcription start site region 84515	359 bp downstream
Tssr84516	transcription start site region 84516	335 bp downstream
Tssr84517	transcription start site region 84517	309 bp downstream
Tssr84518	transcription start site region 84518	377 bp upstream
Tssr84519	transcription start site region 84519	425 bp upstream
Tssr84520	transcription start site region 84520	577 bp upstream
Tssr84521	transcription start site region 84521	618 bp upstream
Tssr84522	transcription start site region 84522	642 bp upstream
Tssr84523	transcription start site region 84523	740 bp upstream
Tssr84524	transcription start site region 84524	921 bp upstream
Tssr84525	transcription start site region 84525	974 bp upstream
Tssr84526	transcription start site region 84526	1005 bp upstream
Tssr84527	transcription start site region 84527	1674 bp upstream
Tssr88995	transcription start site region 88995	803 bp upstream
Tssr88996	transcription start site region 88996	763 bp upstream
Tssr88997	transcription start site region 88997	460 bp downstream