rs227484351 SNP Detail

Summary

• ID
  rs227484351
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54411831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAACTTGC TTCCTTGTGT
  GAGCAACTTC CGGGAGGACT CACCTTGCTT GTCTCTCGGT GGAGTTAAAA AACGGAACCT
  TGAGAGCAGA ATCAATTGAC AAATCTTCCA CTCCAAAGCC CTGCCATGTC TTGATATTTA
  CCACTAATGG AGTGACTGGT GATGATTAGC ATGATGTGAT GAAGATGAGG GCTTTGAGTG
  K
  TTTTGGTTTG TTTTTTTTTT TTTTTAACCC ATGATTAAGA AGCAAATAGT AGAATTTTTG
  GAGCAAGCCA CCAGGCAGTA GTCCCTGAAG ACAGCCGAAG TACCTGGGCA TGATCTCTTT
  CTGGGTTGCT TTTTGTAGTG TTCAGGGACC TGTTTGAAAG CTAATGACCT GTTGCTGAGT
  ACCAGTGTGT GTTCCAGCTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324635222	CHEV_14_54794049	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227484351					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54411831 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
Rr492147	regulatory region 492147	763 bp distal
Rr492148	regulatory region 492148	1980 bp proximal
Tcra	T cell receptor alpha chain	within coordinates
Traj41	T cell receptor alpha joining 41	1897 bp upstream
Traj42	T cell receptor alpha joining 42	1399 bp upstream
Traj43	T cell receptor alpha joining 43	368 bp upstream
Traj44	T cell receptor alpha joining 44	624 bp downstream
Traj45	T cell receptor alpha joining 45	1484 bp downstream
Traj46	T cell receptor alpha joining 46	1976 bp downstream
Tssr125558	transcription start site region 125558	840 bp downstream
Tssr125559	transcription start site region 125559	820 bp downstream
Tssr125560	transcription start site region 125560	784 bp downstream
Tssr125561	transcription start site region 125561	770 bp downstream
Tssr125562	transcription start site region 125562	24 bp upstream
Tssr125563	transcription start site region 125563	226 bp upstream
Tssr125564	transcription start site region 125564	491 bp upstream
Tssr125565	transcription start site region 125565	580 bp upstream
Tssr125566	transcription start site region 125566	1600 bp upstream
Tssr125567	transcription start site region 125567	1834 bp upstream
Tssr125568	transcription start site region 125568	1853 bp upstream
Tssr125569	transcription start site region 125569	1879 bp upstream
Tssr125570	transcription start site region 125570	1897 bp upstream