rs227491530 SNP Detail

Summary

• ID
  rs227491530
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60216471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTGTACTT ATCTACCAGG GAATAAGTAG
  TCTGAGTCTG CTAAGGAAGC AAGTTGCTAT GGGAAATGGA AACAGTGATA GCTAGTATAC
  CCCATGCTCA GAGCCAAACC AGACAGAGTG AGCTGTCCtg tgtgcgtaca tgcatgcgtg
  Y
  gtgcgtgcgt gcgtgcgtgc gtgcgtgtgc gtgtgtgtgt gtgtgtgTAa ctggcccttc
  aaattctttg gtcagttagg gtcctcacac cacaggacct atgtataccc tgttccctgt
  gccagaaaaa caaacaaaca aacaaacaaa                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323325238	CHEV_10_59843440	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227491530					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60216471 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Gm56993	predicted gene, 56993	1314 bp upstream
Rr368996	regulatory region 368996	517 bp upstream
Rr432129	regulatory region 432129	within coordinates
Rr432130	regulatory region 432130	324 bp proximal
Tssr93630	transcription start site region 93630	96 bp downstream
Tssr93631	transcription start site region 93631	34 bp downstream
Tssr97724	transcription start site region 97724	460 bp upstream