rs227491891 SNP Detail

Summary

• ID
  rs227491891
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:82604173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGAAAAG GATTTTCAGT
  CACTCTGAGG ACACTTTTCA AAGCCATTGT CCTAGGAAAC ACTGCAGAAA AGCGGGTCAC
  GCGCTTTATC CACGGCGGAC GGGGATTAAG TGAAGCATTC TTCCCCCCTC CCCCCATTTG
  TCCTTTGTTT CTCTTGCCAT TGATTTTGGT TATGAGACTT CTTTTTCTAA AGGATTACCC
  R
  AAATCTCTTC TCCTGTTGGT TTTGAGAGCG CTCCTGGCCC CTTTCTGAGT TTCCAAGGCA
  GGCTATGGAA AACCATCAGA TTTGTGAGCT GTGGGAGGAA GGCTTGCCAT GGGCCAACAT
  TACAGTCTTT CTCTGGGGCA TGTTGTTCCA GCACAGGGAA CCAGTGCAGG TTCCTGGGGT
  CCACTGACTG ACGGGAAACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401436766	MGP_WTSI_18_82755440	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227491891					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401436766	MGP_WTSI_18_82755440	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82604173 () rs orientation: forward

Symbol	Name	Function Class
D18Nds1	DNA segment, Chr 18, Nuffield Department of Surgery 1	412 bp proximal
Gm58829	predicted gene, 58829	410 bp upstream
Mbp	myelin basic protein	411 bp downstream
Rr541827	regulatory region 541827	1913 bp distal
Tssr152152	transcription start site region 152152	1923 bp downstream
Tssr152153	transcription start site region 152153	1799 bp downstream
Tssr152154	transcription start site region 152154	1776 bp downstream
Tssr152155	transcription start site region 152155	1740 bp downstream
Tssr152156	transcription start site region 152156	1671 bp downstream
Tssr152157	transcription start site region 152157	1593 bp downstream
Tssr152158	transcription start site region 152158	1556 bp downstream
Tssr152159	transcription start site region 152159	1532 bp downstream
Tssr152160	transcription start site region 152160	1486 bp downstream
Tssr152161	transcription start site region 152161	1470 bp downstream
Tssr152162	transcription start site region 152162	1449 bp downstream
Tssr152163	transcription start site region 152163	1432 bp downstream
Tssr152164	transcription start site region 152164	1387 bp downstream
Tssr152165	transcription start site region 152165	1314 bp downstream
Tssr152166	transcription start site region 152166	1278 bp downstream
Tssr152167	transcription start site region 152167	1246 bp downstream
Tssr152168	transcription start site region 152168	1217 bp downstream
Tssr152169	transcription start site region 152169	1164 bp downstream
Tssr152170	transcription start site region 152170	1056 bp downstream
Tssr152171	transcription start site region 152171	1012 bp downstream
Tssr152172	transcription start site region 152172	909 bp downstream
Tssr152173	transcription start site region 152173	894 bp downstream
Tssr152174	transcription start site region 152174	860 bp downstream
Tssr152175	transcription start site region 152175	825 bp downstream
Tssr152176	transcription start site region 152176	636 bp downstream
Tssr152177	transcription start site region 152177	456 bp downstream
Tssr154083	transcription start site region 154083	1818 bp upstream
Tssr154084	transcription start site region 154084	1764 bp upstream
Tssr154085	transcription start site region 154085	1507 bp upstream
Tssr154086	transcription start site region 154086	961 bp upstream
Tssr154087	transcription start site region 154087	740 bp upstream
Tssr154088	transcription start site region 154088	711 bp upstream
Tssr154089	transcription start site region 154089	593 bp upstream
Tssr154090	transcription start site region 154090	533 bp upstream