rs227492341 SNP Detail

Summary

• ID
  rs227492341
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:36060141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGCAGGCC GGAAGTGGAC
  GCCGGGAAGA GCATGTGCCG GCTACGTCCG CCCCCGCGCA GCCCCTCGCC AGCCTTCCTG
  CCGCGCGCTC GCCGCGCACT GCCTCTAGGG GGCGCTCGCG GGCGAGCGTT TAGTCGTCGT
  CACCGCCACC CCTCCCGACA GGAGTGGGGG TGGGGCGGAA AGGGAGCAGC TCCGGAGACT
  W
  GAGAAGTTGA CTGGTCACCA AGGTGACCGT GTCCTATGCA GGTCCCACCC TAATGCTTCT
  GAACCTGATC TGGAAGGAAT GACCTTTCTT CCTGGTCTAA AGGTCATAGG TACGCTTGAG
  GGTGCCTCAC TCACAGAAGT CGAGACTTAC TACTTCTGAT GGTGCTGCTC AATTCTTAAA
  CACTTCCCCT ACGCCCCCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss403267848	MGP_WTSI_X_34336483	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs227492341					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403267848	MGP_WTSI_X_34336483	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:36060141 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22665	CpG island 22665	within coordinates
Rr690675	regulatory region 690675	1646 bp distal
Rr690676	regulatory region 690676	1600 bp distal
Rr690677	regulatory region 690677	827 bp distal
Rr690678	regulatory region 690678	within coordinates
Rr690679	regulatory region 690679	175 bp distal
Rr690680	regulatory region 690680	82 bp distal
Rr690681	regulatory region 690681	108 bp proximal
Rr690682	regulatory region 690682	188 bp proximal
Slc25a5	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	within coordinates
Tssr5608	transcription start site region 5608	760 bp downstream
Tssr160750	transcription start site region 160750	878 bp downstream
Tssr160751	transcription start site region 160751	848 bp downstream
Tssr160752	transcription start site region 160752	835 bp downstream