rs227496208 SNP Detail

Summary

• ID
  rs227496208
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180499853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAACTGGG CTGGTGAGGG
  GATTAATCAA GTCAGTGGAA ACTTTCAGAA CCCTAGTGGA TAGTGCCCCA GCTTGACCTT
  TCTCATAGAC AGAGGGGCTC TCCTTTCTAT TCTGCAGAGG ACACAGAGAT GCAAAGAAGA
  GGAATTCACT CCTCACAGTC ATGGAGCCTG GGAAGTCCTG GCTGGGGGGG GGGGGGGGGG
  A
  GGTGAGCAGA CTTGGTGAAC TCTAGATCAC ATAGCAGGAA CGGTGGAACT GCCTCTGTGT
  AAAAGCCAGG GTTGCACAGC CACAAAAGCA TCTCCTGCAG GAGGACCTAA TTGAGAACTG
  CCTGAGAGAC CAAGGATTGC TGGTATAAAC AATGCCAGCC AATCAGGAAC TGCTGTTTAG
  AAGAGATGCT TTCGTAGGAC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	CBA/J	CZECHII/EiJ	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	SM/J	WSB/EiJ	ZALENDE/EiJ
ss356768785	MGP_WTSI_2_180592765	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	CBA/J	CZECHII/EiJ	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	SM/J	WSB/EiJ	ZALENDE/EiJ
rs227496208					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356768785	MGP_WTSI_2_180592765	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180499853 () rs orientation: forward

Symbol	Name	Function Class
Gm14342	predicted gene 14342	within coordinates
Rr572864	regulatory region 572864	454 bp distal