rs227498265 SNP Detail

Summary

• ID
  rs227498265
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112639585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAAGAAGA AATCCCAGCT
  CAGTGACTGT CAGAGTGGGT GTGGCCTGGA GGCAGAGGGC TGTACTGCAA GATCTCTCTC
  GGTGGATGTC CCCTACCCCC ACCCAGCCCC AAGGTCTGCT GATGACAGTC AGCTGTCCAG
  AGCCGTGTAA AAATAAATTC ATACACACGG AGTGAAGAAA CACAGCCATG TTAACGCCAA
  K
  GTCCACATCA AGCCGACTTA AGCATGGGAC ACTCTTCCCA CCATGCCATG CCGTAAGGGC
  ATATGGTTGC TATTGTTAAG TCTTAAGAGT TCAGCCCCTC TGGGACACTG GCCCGTGAGC
  CACACGCCCA GCTGGGGCCC CACCAAGGCG ACTCGCCCTT CACTTTAGTG ATGGCTCTAG
  GCAGTCAAGG CTAGCCACCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387390186	MGP_WTSI_12_113911362	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227498265					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387390186	MGP_WTSI_12_113911362	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112639585 () rs orientation: forward

Symbol	Name	Function Class
Akt1	thymoma viral proto-oncogene 1	within coordinates
Cpgi5173	CpG island 5173	111 bp proximal
Gm30150	predicted gene, 30150	1337 bp upstream
Rr473550	regulatory region 473550	1598 bp distal
Rr473551	regulatory region 473551	1097 bp distal
Rr473552	regulatory region 473552	222 bp distal
Rr473553	regulatory region 473553	within coordinates
Rr473554	regulatory region 473554	1115 bp proximal
Rr473555	regulatory region 473555	1228 bp proximal
Rr473556	regulatory region 473556	1271 bp proximal
Rr473557	regulatory region 473557	1831 bp proximal
Tssr115391	transcription start site region 115391	1261 bp upstream
Tssr117874	transcription start site region 117874	1953 bp upstream
Tssr117875	transcription start site region 117875	1574 bp upstream
Tssr117876	transcription start site region 117876	1107 bp upstream
Tssr117877	transcription start site region 117877	865 bp downstream
Tssr117878	transcription start site region 117878	924 bp downstream
Tssr117879	transcription start site region 117879	1042 bp downstream
Tssr117880	transcription start site region 117880	1192 bp downstream
Tssr117881	transcription start site region 117881	1223 bp downstream
Tssr117882	transcription start site region 117882	1602 bp downstream
Tssr117883	transcription start site region 117883	1623 bp downstream
Tssr117884	transcription start site region 117884	1675 bp downstream