rs227499710 SNP Detail

Summary

• ID
  rs227499710
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75063474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTCTGCT GACGTCGGCA
  GCGCGTCAGT GTGTAGGAGC CGCGGCCGCA TGAATGAGCC GCCGCACGAG TACTACGCGC
  GCCTATAAAA GCGGCGGCGC CGGCCGGGCT GCGGGAGGCA AGCCGGCACT GGTGCGACGC
  GGCCCGACAG GTAAGGACCA CCAACAGTCG GAGATGGGCA GATGCGCGGA CGCCATGGGA
  R
  GGCGAGGAGG GGACCGGAGG GGCGGCGGGT TGGAGGGGGA CTCCGGAGTG AGGATGGGGG
  GCAGAGTGGG AGGGACGAAG GTTCCTTTCA GCTTGGTGGA CCAGGGGCCG GCGGCTGACC
  CAACCCTATG CAGCACCTGC CGGCACCCAA ATGCAGACGC AGACACTATG GAGAAACATC
  AAGCGGAGAG CCGAGCCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323750381	CHEV_11_74986150	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227499710					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75063474 () rs orientation: forward

Symbol	Name	Function Class
1700016P03Rik	RIKEN cDNA 1700016P03 gene	within coordinates
Cpgi3252	CpG island 3252	1725 bp distal
Cpgi3253	CpG island 3253	1146 bp distal
Cpgi3254	CpG island 3254	within coordinates
Mir132	microRNA 132	1034 bp upstream
Mir212	microRNA 212	740 bp upstream
Mirc19	microRNA cluster 19, including Mir212 through Mir132	740 bp proximal
Rr402719	regulatory region 402719	350 bp upstream
Rr451077	regulatory region 451077	1977 bp distal
Rr451078	regulatory region 451078	78 bp distal
Rr451079	regulatory region 451079	565 bp proximal
Rr451080	regulatory region 451080	1066 bp proximal
Tssr102928	transcription start site region 102928	193 bp downstream
Tssr102929	transcription start site region 102929	170 bp downstream
Tssr102930	transcription start site region 102930	79 bp downstream