rs227500161 SNP Detail

Summary

• ID
  rs227500161
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17694196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAGTGCA GGGACCGGGC
  CCACGTGACC GCTCCACGAA GGCCACCGGC GGGGGCTCGG AGCGCAGGCC GCGCGCTTTC
  CCGCCGCATC CGGGCGCCGG GCGAGCTCCG GGGACGCCGG GCCCTGGCGG CGGCGGCGGC
  TCGAGCCGTG CCTCGGGCGG GTGAATCATC CCGGCCGACA GCGAGCGCCG CGGCGGCCCG
  Y
  AGCAGCGCCG GAAGATGGCC GAGGCGGGCG CGGGCTTCCT GGAGCAGCTC AAGTCCTGCA
  TCGTGTGGTC GTGGACCTAT CTGTGGACCG TGTGGTTCTT CCTCGTGCTC TTCCTGGTCT
  ACATCCTGAG GGTGCCCCTG AGGATCAACG ACAACCTGAG CACAGGTCAG GCCCGGCCCG
  GCCCGGCCCG GCTCCGCTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367532696	MGP_WTSI_6_17644197	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227500161					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367532696	MGP_WTSI_6_17644197	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17694196 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17178	CpG island 17178			within coordinates
Gm55211	predicted gene, 55211			640 bp downstream
Gm55212	predicted gene, 55212			152 bp downstream
Gm55213	predicted gene, 55213			705 bp upstream
Gm55215	predicted gene, 55215			1157 bp upstream
Rr626833	regulatory region 626833			1253 bp distal
Rr626834	regulatory region 626834			20 bp distal
Rr626835	regulatory region 626835			347 bp proximal
Rr626836	regulatory region 626836			518 bp proximal
St7	suppression of tumorigenicity 7			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr55085	transcription start site region 55085			579 bp downstream
Tssr55086	transcription start site region 55086			260 bp downstream
Tssr55087	transcription start site region 55087			208 bp downstream
Tssr55088	transcription start site region 55088			172 bp downstream
Tssr55089	transcription start site region 55089			106 bp downstream
Tssr55090	transcription start site region 55090			18 bp downstream
Tssr59909	transcription start site region 59909			498 bp downstream