rs227504847 SNP Detail

Summary

• ID
  rs227504847
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:113170610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACA CACAAACAGA
  TAAAAATAAT CTCATGTTTT TAATACATTG CTTGTTTTGG TTGACATTCT CCAACTGGCC
  ATTAAACAAT ATACCTGACT CATGCAAAGA TGGTTCACTT TGAGTCTTAA TGCTTGCAGA
  AGGGATTTCC TGGGGCTTGG AATGAGTAAG CATTTGATCA CACTGCAAGA AAAGTAGCAT
  Y
  CTTGTGGGGT AAGAAAGATA TTCTAATACA AGCATTCTGA CAAATCTCAT GTGGGGTTAC
  CAGCACACAT TTTCAACCGT TGTCATTGGA ACACTGGGAG CTGGGTTGCT ACGAAGCCGG
  TATTTCTTGA ATTTTCAGAC GTACTAGAGT GGGCTTAAGT TATTGAGCAG TTTGAATCTC
  CTAGCCCCAG CATGCACAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390015759	MGP_WTSI_13_113824284	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227504847					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390015759	MGP_WTSI_13_113824284	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:113170610 () rs orientation: forward

Symbol	Name	Function Class
Cdc20b	cell division cycle 20B	1035 bp upstream
Cpgi6106	CpG island 6106	1520 bp distal
Cpgi6107	CpG island 6107	820 bp proximal
Gm61413	predicted gene, 61413	974 bp downstream
Mir449c	microRNA 449c	1907 bp upstream
Mirc34	microRNA cluster 34, including Mir449a through Mir449c	1907 bp proximal
Rr486469	regulatory region 486469	1839 bp distal
Rr486470	regulatory region 486470	1336 bp distal
Rr486471	regulatory region 486471	813 bp proximal
Tssr121163	transcription start site region 121163	1875 bp downstream
Tssr121164	transcription start site region 121164	1022 bp downstream
Tssr121165	transcription start site region 121165	1151 bp upstream