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rs227506445 SNP Detail
Summary
  • ID
    rs227506445
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr18:82602586 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTCTCTTAAT CCCGTGGAGC
CGTGATCGCG GTGGGGCCAG GCCCACGGCA CCCCGACTGG TTAAAACTAT TCGTCCCTTT
TCGTTTGAAG ATTGAGTTTT CTCGGGGTCT TCTCAGCCCT GACTTGTTCC CCGTGCACCT
TGTTCGACTC CGGAGGTTCA GGTGCACGGA CACCCTTCCA AGTTCACCCC TACTCCATCC
Y
CAGACTTTTC ACGGTGAGGC ACACCCCTCC AGCTTCCGTG GGCACTGCGG ATAGACAGGC
ACACCGCCAA GGAGCCAGAG AGCATGGCGC AGGGGACTGT GTGGTCCAGG CTTCCTTTGT
TTTCTTCCCC CTAAAGAGCT TTGTTTTTCC TAACAGGATC AGACAGTCTT GGAGTGGCTT
ATACAACGGG GGCTTGTGGT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss401436740 MGP_WTSI_18_82753853 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs227506445 SNP T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss401436740 MGP_WTSI_18_82753853 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr18:82602586 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
D18Nds1 DNA segment, Chr 18, Nuffield Department of Surgery 1 1999 bp proximal
Gm58829 predicted gene, 58829 161 bp downstream
Mbp myelin basic protein within coordinates
Rr541827 regulatory region 541827 326 bp distal
Tssr152152 transcription start site region 152152 336 bp downstream
Tssr152153 transcription start site region 152153 212 bp downstream
Tssr152154 transcription start site region 152154 189 bp downstream
Tssr152155 transcription start site region 152155 153 bp downstream
Tssr152156 transcription start site region 152156 84 bp downstream
Tssr152157 transcription start site region 152157 6 bp downstream
Tssr152158 transcription start site region 152158 8 bp upstream
Tssr152159 transcription start site region 152159 38 bp upstream
Tssr152160 transcription start site region 152160 88 bp upstream
Tssr152161 transcription start site region 152161 105 bp upstream
Tssr152162 transcription start site region 152162 121 bp upstream
Tssr152163 transcription start site region 152163 146 bp upstream
Tssr152164 transcription start site region 152164 186 bp upstream
Tssr152165 transcription start site region 152165 239 bp upstream
Tssr152166 transcription start site region 152166 305 bp upstream
Tssr152167 transcription start site region 152167 320 bp upstream
Tssr152168 transcription start site region 152168 355 bp upstream
Tssr152169 transcription start site region 152169 416 bp upstream
Tssr152170 transcription start site region 152170 497 bp upstream
Tssr152171 transcription start site region 152171 557 bp upstream
Tssr152172 transcription start site region 152172 664 bp upstream
Tssr152173 transcription start site region 152173 687 bp upstream
Tssr152174 transcription start site region 152174 705 bp upstream
Tssr152175 transcription start site region 152175 728 bp upstream
Tssr152176 transcription start site region 152176 937 bp upstream
Tssr152177 transcription start site region 152177 1105 bp upstream
Tssr154083 transcription start site region 154083 231 bp upstream
Tssr154084 transcription start site region 154084 177 bp upstream
Tssr154085 transcription start site region 154085 52 bp downstream
Tssr154086 transcription start site region 154086 607 bp downstream
Tssr154087 transcription start site region 154087 822 bp downstream
Tssr154088 transcription start site region 154088 862 bp downstream
Tssr154089 transcription start site region 154089 973 bp downstream
Tssr154090 transcription start site region 154090 1045 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory