rs227509653 SNP Detail

Summary

• ID
  rs227509653
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:4266443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTCCCTGG GCAACCTCAG
  AACTGTCTGC TGACTGGAGT AATGGGCTCC CGGCTGCACA CCCAAGTGTC CAGTTCACAC
  TTCTGCAAGC CAGCCCTACA CACTAGCTAC TGATTCCTGA CACTTCACAT TCCTCCCCAT
  AATCCCACCT GCCTGTTCAC ACCCTGGCTC CTGCACTCTC TGCAGCCCCT CCCACACCCT
  M
  CTGTACATCC TTGACCACAA CAGCCTTTCC AGTTCACCCG CACACTCGCT CTGGGCTATT
  TCCTTCGCTT CTTTTCCGGC GGCCTCAGAG GGCTGCTGAC CAGAAAGCAG TGGCTTTCCT
  CTCATCTCCC TGAGAAACCC AGGGCCCTCT TGTGGCATAG TGGAGCAGCT TTTCCCTCAG
  CCTAAGCGCA GCTCCCGGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401632967	MGP_WTSI_19_4216389	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227509653					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401632967	MGP_WTSI_19_4216389	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4266443 () rs orientation: forward

Symbol	Name	Function Class
1500032F14Rik	RIKEN cDNA 1500032F14 gene	within coordinates
Clcf1	cardiotrophin-like cytokine factor 1	within coordinates
Cpgi10392	CpG island 10392	676 bp distal
Gm45928	predicted gene, 45928	within coordinates
Gm55500	predicted gene, 55500	901 bp upstream
Rr363316	regulatory region 363316	within coordinates
Rr405789	regulatory region 405789	1924 bp downstream
Tssr154302	transcription start site region 154302	1992 bp downstream
Tssr154303	transcription start site region 154303	1957 bp downstream
Tssr154304	transcription start site region 154304	542 bp downstream
Tssr157472	transcription start site region 157472	279 bp upstream