rs227511114 SNP Detail

Summary

• ID
  rs227511114
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116550391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTCTTTC AGGTATGTAC
  TTTAAGGGTG GGAGGTGGGA GTTGCTATGA GAACAGTCTT GTTAGCTAAA AGCCATTTAT
  TTGGAAAAGC CAGAACACAT CTGAGGAATA CCCTTCTTCA TGTCTTTTCT TTATTTTAAT
  ATAAATGTGT CATATAAATG TCAGTAGACA ACCTGGTGTT TCTCAGACAT TGTCCACTAT
  Y
  TTTTAGAGAT AGTGTCTCAT TGACTTGTCT TCTGGGGCTC AAATTCAGGT GCACATAGTT
  GAAAGAGCAG CACTTCACTG AGTCATCTCT CTTCGGCTCC TTTGTTTTTA GTTTTGAGAC
  AGTCTTGTTA TAATATAGCC CTAGATGGCC TTAAACTTCA GGTTGACCTC TTACTAGAAT
  TTATGTGCCT GTGCCATCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321277800	CHEV_4_116365799	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227511114					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116550391 () rs orientation: forward

Symbol	Name	Function Class
Prdx1	peroxiredoxin 1	within coordinates
Tssr38559	transcription start site region 38559	1295 bp downstream
Tssr38560	transcription start site region 38560	1257 bp downstream
Tssr38561	transcription start site region 38561	525 bp upstream
Tssr38562	transcription start site region 38562	623 bp upstream
Tssr38563	transcription start site region 38563	753 bp upstream
Tssr38564	transcription start site region 38564	886 bp upstream
Tssr38565	transcription start site region 38565	917 bp upstream