rs227512697 SNP Detail

Summary

• ID
  rs227512697
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40367830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCCGAGTCA AGGCTGCTCC AATCAGCCTA
  ATGAAATAGG AGCACAATCC AAACTTTCTC AAGGCAACGA TTGGCTAAGC AGCTCTGGTT
  AGCAAACTCC CTGTTTTTTT TTCCCCTGGG GGAGGGGAAT CAATGGATTT AGCCCTCCCT
  Y
  GCAGACCACC CAAGATACAG GGTTGAAGGA AAACTGGGTG ACTTTTCAGC CAAATCTCTC
  TCCTAAGAAA TGCGCGTTCT CCGAGTTGTT TGGAGTGCTG ACCAGGAAGA CAGGGCATAC
  ATAATCAGAA GGAAAATGGA AAGTTCCTGG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322916248	CHEV_9_40264119	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227512697					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40367830 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21594	CpG island 21594	167 bp distal
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676839	regulatory region 676839	1109 bp distal
Rr676840	regulatory region 676840	280 bp distal
Rr676841	regulatory region 676841	678 bp distal
Tssr84449	transcription start site region 84449	1213 bp downstream
Tssr84450	transcription start site region 84450	624 bp downstream
Tssr84451	transcription start site region 84451	1121 bp upstream
Tssr84452	transcription start site region 84452	1149 bp upstream
Tssr84453	transcription start site region 84453	1890 bp upstream
Tssr88934	transcription start site region 88934	1150 bp upstream
Tssr88935	transcription start site region 88935	1099 bp upstream
Tssr88936	transcription start site region 88936	1078 bp upstream
Tssr88937	transcription start site region 88937	1014 bp upstream
Tssr88938	transcription start site region 88938	757 bp upstream
Tssr88939	transcription start site region 88939	722 bp upstream
Tssr88940	transcription start site region 88940	690 bp upstream
Tssr88941	transcription start site region 88941	401 bp upstream
Tssr88942	transcription start site region 88942	386 bp upstream
Tssr88943	transcription start site region 88943	358 bp upstream
Tssr88944	transcription start site region 88944	310 bp upstream
Tssr88945	transcription start site region 88945	293 bp upstream
Tssr88946	transcription start site region 88946	197 bp upstream
Tssr88947	transcription start site region 88947	168 bp upstream
Tssr88948	transcription start site region 88948	138 bp upstream
Tssr88949	transcription start site region 88949	938 bp downstream