rs227516941 SNP Detail

Summary

• ID
  rs227516941
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78239407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGGGTCTAG TAGCTCAGTT TGGAGGCCCG
  AGGGTAGGAC TTCAGCCGCC ATGCCCACCG TTATATTGTC AGAGGTGACA TGTGTGTGGC
  TGCCTCTCTG AGGTAGTCTC ACCTTCAGCA GAGGGAAAGG GGTCAGAAGG CTGGCATCAA
  R
  CTCTTCAACA TAGAGAAGAA GTTCCAGCAG GTGGACGTCC ACCCTGGTCA GCCTGTTGCC
  CACAAGGTAG TCTTGTCCAT GGCTCTTCAA CACCTGCAAA ATGAAAGGAG TCCGATTATG
  AACACAAAGA GTTGGGCTGG GGCCCTCACT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323016013	CHEV_9_78179932	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227516941					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78239407 () rs orientation: forward

Symbol	Name	Function Class
Gm70238	predicted gene, 70238	within coordinates
Gsta2	glutathione S-transferase, alpha 2 (Yc2)	within coordinates
Tssr2946	transcription start site region 2946	1180 bp upstream