rs227522024 SNP Detail

Summary

• ID
  rs227522024
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108222040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTACCAGG AAGGAAATTA
  CTGAAGGACT AGGCACCGCT TGTCATAGGT GACAAGATCA GAATTCTCTC TCCAGTCTGT
  GCGCCAGCCT TTTAAAACAT TTGTGTTAAT TCTTTGAGAG TTTCATACAC TATTTTGATT
  ATATTCATTC CCCTCCCCCA GTTCCTTCCA GATCCCCATT TCATACCCAC CCAACTTTGT
  R
  CCCTCACTAA AACAAAACAA AACAAAACAA AACAAGAAAA CCCAAAAACA AAGCAACAAC
  AACAAAAAAC CCAAAACAAC AACAACAAAA CCACCTCGCC TTATTAGTTC TGGGTATGTG
  GCATCAACTG GAACTTATTT GACCTACCCG TAAGGAAAAA TAACTTCCTC TCTTTCAGTA
  GCTATCCGTT ACCAATAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320866503	CHEV_3_108117642	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227522024					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108222040 () rs orientation: forward

Symbol	Name	Function Class
Rr583205	regulatory region 583205	1296 bp distal
Rr583206	regulatory region 583206	240 bp distal
Rr583207	regulatory region 583207	261 bp distal
Sort1	sortilin 1	Intron
Tssr31242	transcription start site region 31242	1794 bp downstream