rs227524003 SNP Detail

Summary

• ID
  rs227524003
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:71229092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGA CGACGGAAGT GGCCGGATCC
  A
  GGGTCGTGTC CCGCTCTCCG CCCCG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322701504	CHEV_8_73300347	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227524003					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71229092 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2010320M18Rik	RIKEN cDNA 2010320M18 gene			414 bp upstream
Mast3	microtubule associated serine/threonine kinase 3			1669 bp downstream
Pik3r2	phosphoinositide-3-kinase regulatory subunit 2			Intron
				Noncoding-Transcript-Variant
Rr368551	regulatory region 368551			659 bp upstream
Rr400915	regulatory region 400915			165 bp upstream
Rr664925	regulatory region 664925			230 bp distal
Rr664926	regulatory region 664926			255 bp proximal
Rr664927	regulatory region 664927			258 bp proximal
Rr664928	regulatory region 664928			298 bp proximal
Tssr77827	transcription start site region 77827			314 bp upstream
Tssr77828	transcription start site region 77828			330 bp upstream
Tssr77829	transcription start site region 77829			399 bp upstream
Tssr77830	transcription start site region 77830			884 bp upstream
Tssr81673	transcription start site region 81673			186 bp downstream
Tssr81674	transcription start site region 81674			202 bp downstream
Tssr81675	transcription start site region 81675			272 bp downstream