rs227524515 SNP Detail

Summary

• ID
  rs227524515
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102490600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGGTCCT GTCTCCCAAA
  TGCACTTCTC AGGCTTCCCG GAGCCTAGAA CAGAATAAAA ATAATAACTA GGGACCCCAG
  CTTTTGGGCT ACTTCACAAA TGGCACTAGC TGCTTTGGAG AGATCGGTGA ACCTACATGT
  GACCTCAAAA GCAAGTATGA GGGTCTTCTC GGGACTGTAT ACTCGAGTCC TTGGTTCTGG
  Y
  ATTTTCTGGG GGCATGTTTA ATAGAAATCA AACTCCGCCA ACTTTCGGTG AGGTGGTGGG
  TGGTGAGTGG AAAGATGGTG TTTAAAGCCA GACATCGAGA TTCCAACCTC AGACAAAGAA
  AATACGTCTA AATCTGCCCA TCTTCATCCA AGAGAAAGAA CCTATTCATC TATTTCTCTC
  ATCCCACGAA TCTTTCCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355075052	MGP_WTSI_2_102500412	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227524515					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355075052	MGP_WTSI_2_102500412	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102490600 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11978	CpG island 11978			500 bp distal
Gm57687	predicted gene, 57687			within coordinates
Rr561713	regulatory region 561713			1586 bp distal
Rr561714	regulatory region 561714			1443 bp distal
Rr561715	regulatory region 561715			964 bp distal
Rr561716	regulatory region 561716			179 bp distal
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2			Intron
				Noncoding-Transcript-Variant
Tssr19099	transcription start site region 19099			1944 bp downstream
Tssr19100	transcription start site region 19100			1675 bp downstream
Tssr19101	transcription start site region 19101			1586 bp downstream
Tssr19102	transcription start site region 19102			1560 bp downstream
Tssr19103	transcription start site region 19103			1513 bp downstream
Tssr19104	transcription start site region 19104			1491 bp downstream
Tssr19105	transcription start site region 19105			1421 bp downstream
Tssr19106	transcription start site region 19106			1403 bp downstream
Tssr19107	transcription start site region 19107			1383 bp downstream
Tssr19108	transcription start site region 19108			1347 bp downstream
Tssr19109	transcription start site region 19109			1305 bp downstream
Tssr19110	transcription start site region 19110			1023 bp downstream