rs227525263 SNP Detail

Summary

• ID
  rs227525263
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9929377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAACCCC AGAAGGTGTG
  GTCTTCAGGA GGTTCATTTA AATAGAAGGA ATCAGCAGGG CACAGATTAG ACACAGGTTA
  AGGGAAGTTG TAGCATTTGT CAGCATCAAA GCTGTGCTGG GAAAGATTGT CCTCAGGGTG
  AGTCTCCTGG AAGGGTGGCC CTATTTAAAG TGTCTTAGTA AGATTATAGG AAGAATAGCA
  S
  GAGAAAGAAA CACGTTTTGA AATGCCAATG AAACTATAAT TAGCTCATTC GTCTCCCCCT
  TGAGCCATTT GAACTGTAGT CAAAGGCTAA AAGTGTGCTT TAGGTCTTCA TTCTCCTTGA
  GGTCCGCGAC CATAGCCAAT GCATCTCCTG ATTTGTGCTG AGCTCCCATA AGTGCTCAGA
  GCCCCTTTGG GGATGAAAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320652240	CHEV_3_9864317	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227525263					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9929377 () rs orientation: forward

Symbol	Name	Function Class
Gm56771	predicted gene, 56771	within coordinates
Rr367411	regulatory region 367411	1486 bp upstream
Rr573524	regulatory region 573524	954 bp distal
Rr573525	regulatory region 573525	579 bp proximal