rs227525429 SNP Detail

Summary

• ID
  rs227525429
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:101169143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTCCCA GCTGGTTCTG
  TCCTGCAGGA CAGGGGACAG GTGTGTGCCA TCTTAGAGGC TGGGACTTTT TATTCAGCAG
  GGCACACATC TCTCTAGGGC TGCAGAAAGC TGGGGAAGGG GGCAGAAGGT GTGTGTGTGT
  GTGGCCTGCA GTGGTGCTCA GAAACAGAAA ACCTAGTGGG CAGCCTCTGG TTCTCCACAG
  M
  ACTTGTGTTT CTGGCACTGG ATGAAAGGAC ACAGGCAGAG GGTTTGGTTC TTGCTGGGGG
  TGGACTTGGG AACAGGCTGT GTGTTTGTCC CAGTGCTGGG TGCCTGCTTG GCTTCCCCCA
  CCTCCACCCC CTTAGTCCTC TCCTCTGCGC CAGGAAAAGG GCAGGTGGAC ACATGCAGAC
  ACCTGTTAGA ACAGGTGTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SWR/J	WSB/EiJ
ss395193002	MGP_WTSI_15_101101693	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SWR/J	WSB/EiJ
rs227525429					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395193002	MGP_WTSI_15_101101693	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:101169143 () rs orientation: forward

Symbol	Name	Function Class
Nr4a1	nuclear receptor subfamily 4, group A, member 1	within coordinates
Tssr133222	transcription start site region 133222	1846 bp downstream
Tssr133223	transcription start site region 133223	1156 bp downstream
Tssr133224	transcription start site region 133224	1138 bp downstream
Tssr133225	transcription start site region 133225	1122 bp downstream
Tssr133226	transcription start site region 133226	1104 bp downstream
Tssr133227	transcription start site region 133227	1091 bp downstream
Tssr133228	transcription start site region 133228	1075 bp downstream
Tssr133229	transcription start site region 133229	1037 bp downstream
Tssr133230	transcription start site region 133230	978 bp downstream
Tssr133231	transcription start site region 133231	952 bp downstream
Tssr133232	transcription start site region 133232	925 bp downstream
Tssr133233	transcription start site region 133233	904 bp downstream
Tssr133234	transcription start site region 133234	878 bp downstream
Tssr133235	transcription start site region 133235	836 bp downstream
Tssr133236	transcription start site region 133236	797 bp downstream
Tssr133237	transcription start site region 133237	766 bp downstream
Tssr133238	transcription start site region 133238	748 bp downstream
Tssr133239	transcription start site region 133239	685 bp downstream
Tssr133240	transcription start site region 133240	617 bp downstream
Tssr133241	transcription start site region 133241	608 bp downstream
Tssr133242	transcription start site region 133242	596 bp downstream
Tssr133243	transcription start site region 133243	575 bp downstream
Tssr133244	transcription start site region 133244	545 bp downstream
Tssr133245	transcription start site region 133245	499 bp downstream
Tssr133246	transcription start site region 133246	469 bp downstream
Tssr133247	transcription start site region 133247	388 bp downstream
Tssr133248	transcription start site region 133248	370 bp downstream
Tssr133249	transcription start site region 133249	472 bp upstream
Tssr133250	transcription start site region 133250	506 bp upstream
Tssr133251	transcription start site region 133251	537 bp upstream
Tssr133252	transcription start site region 133252	884 bp upstream
Tssr133253	transcription start site region 133253	895 bp upstream
Tssr133254	transcription start site region 133254	915 bp upstream
Tssr133255	transcription start site region 133255	948 bp upstream
Tssr133256	transcription start site region 133256	989 bp upstream
Tssr133257	transcription start site region 133257	1007 bp upstream
Tssr133258	transcription start site region 133258	1459 bp upstream
Tssr133259	transcription start site region 133259	1476 bp upstream
Tssr133260	transcription start site region 133260	1494 bp upstream
Tssr133261	transcription start site region 133261	1504 bp upstream
Tssr133262	transcription start site region 133262	1515 bp upstream
Tssr133263	transcription start site region 133263	1536 bp upstream
Tssr133264	transcription start site region 133264	1555 bp upstream
Tssr133265	transcription start site region 133265	1764 bp upstream
Tssr133266	transcription start site region 133266	1789 bp upstream
Tssr133267	transcription start site region 133267	1830 bp upstream
Tssr133268	transcription start site region 133268	1877 bp upstream
Tssr136545	transcription start site region 136545	952 bp upstream
Tssr136546	transcription start site region 136546	831 bp upstream
Tssr136547	transcription start site region 136547	756 bp upstream
Tssr136548	transcription start site region 136548	739 bp upstream
Tssr136549	transcription start site region 136549	714 bp upstream
Tssr136550	transcription start site region 136550	598 bp upstream
Tssr136551	transcription start site region 136551	493 bp upstream