rs227525605 SNP Detail

Summary

• ID
  rs227525605
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138104419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTAATTC TTATATTCAG
  CAGTCCTTAA CTACCTTTCA TGCTTCATCT TGAGTGGGGG CCTCTGAGAT TTCCCTCATG
  AACTTTAGCA TATCAACTGA TCTTGTCACC ATTAAGGTCT TGCTAAGGTA GTAAGCCATT
  TATTGAGGTT TCATGATGAT ACCCTTCCCG TATACCTAAA AGACACTATC TTGTAGCAGA
  Y
  GTCCTGGTCC TCTGGCTTTT ACACTCTTTC CACTCCCTCT TCTGTGAAGT TTTCTGAGCT
  TGAGTAAGTT TCCCAAGCCT TGTGTTACAG ATGCATCAAA TTGGGTTGGA AACCTCAAGG
  TCAGTCATTC TCTGAGTTTG ACTGGTTGTG GCTTTCTATA ATGTTCTCCC TCTACTACCA
  AAAGAAGACT GAATGAATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351608874	MGP_WTSI_1_140073258	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227525605					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351608874	MGP_WTSI_1_140073258	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138104419 () rs orientation: forward

Symbol	Name	Function Class
Ptprc	protein tyrosine phosphatase receptor type C	973 bp upstream
Rr396335	regulatory region 396335	1153 bp downstream
Rr396336	regulatory region 396336	193 bp downstream
Rr419677	regulatory region 419677	1425 bp distal
Rr419678	regulatory region 419678	885 bp distal
Tssr233	transcription start site region 233	1056 bp upstream
Tssr9154	transcription start site region 9154	1044 bp downstream
Tssr9155	transcription start site region 9155	981 bp downstream
Tssr14021	transcription start site region 14021	1483 bp upstream
Tssr14022	transcription start site region 14022	1427 bp upstream
Tssr14023	transcription start site region 14023	1370 bp upstream
Tssr14024	transcription start site region 14024	1037 bp upstream
Tssr14025	transcription start site region 14025	1021 bp upstream
Tssr14026	transcription start site region 14026	993 bp upstream
Tssr14027	transcription start site region 14027	977 bp upstream
Tssr14028	transcription start site region 14028	941 bp upstream
Tssr14029	transcription start site region 14029	917 bp upstream
Tssr14030	transcription start site region 14030	769 bp upstream
Tssr14031	transcription start site region 14031	745 bp upstream