rs227526616 SNP Detail

Summary

• ID
  rs227526616
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:101940309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTACTGTGG TATTTTTAAA
  AAAAGAATTG GGAGGCTGGG CAGTGGTGGT GCACTAAGAA GGCAGAAGCA GGAGGATCTC
  TGAGTTCAAG GCCAGCCTGG GCTACACAGA GAAACTGTGT CAAGAAAAAG AGGGGGGGGG
  AGGCAGACAG AAGGGGGTGA GAGAAGGAGG GAAGCAGCCT TGGCTTTGAA AAGCACACAC
  Y
  GTATCAGAGC CACACACTCT GTCTTGTCAT TTATTTTTAT TTTATTTTAT TTTTTTAATT
  TTATTTTTTG GTTTTTCGAG ACAGGATTTC TCTGTATAGC CCTGGCTGTC CTGGAACTCA
  CTTTGTAGAC CAGGCTGGCC TCGAACTCAG AAATCCGCCT GCCTCTGCCT CCCGAGTGCT
  GGGATTAAAG GCGTGTGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387128014	MGP_WTSI_12_103212260	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227526616					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387128014	MGP_WTSI_12_103212260	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101940309 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5001	CpG island 5001	1289 bp proximal
Cpsf2	cleavage and polyadenylation specific factor 2	1938 bp upstream
Gm59441	predicted gene, 59441	294 bp downstream
Ndufb1	NADH:ubiquinone oxidoreductase subunit B1	within coordinates
Rr387709	regulatory region 387709	1083 bp upstream
Tssr3923	transcription start site region 3923	1833 bp downstream
Tssr114729	transcription start site region 114729	1316 bp upstream
Tssr114730	transcription start site region 114730	1675 bp upstream
Tssr114731	transcription start site region 114731	1915 bp upstream
Tssr114732	transcription start site region 114732	1956 bp upstream
Tssr117383	transcription start site region 117383	1633 bp downstream
Tssr117384	transcription start site region 117384	1715 bp downstream
Tssr117385	transcription start site region 117385	1863 bp downstream
Tssr117386	transcription start site region 117386	1885 bp downstream
Tssr117387	transcription start site region 117387	1929 bp downstream
Tssr117388	transcription start site region 117388	1973 bp downstream