rs227530568 SNP Detail

Summary

• ID
  rs227530568
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113616608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTAGAAAA GTCACACTAC
  CACTGAGCCA TAGTCCAGGT GACGTTCTTG GACTTTTGAG ACCTGTTTTT CGTTTGTTTG
  TTTGTTTGTT GTTGTGTTTT TTAATGTAGC CCATGTTGCC TTGGAATTTG TCATTGTCCT
  GTCTCAGCCT CCTAAGTGTG GGATTATAAA TTTGAATCTC TTGTATTTGT GGGGTAGGGG
  R
  TGGGGTGGGA AGGAATAAGG GGCTCATGTA GCTCAGGCTA GCCTTGGATG CCCTGGAACT
  TCTGACCCTC TCACTTCCAT TTTGGAATAC TGGGATTGCA GGCTCAGCTT ATGTGGTGCT
  GGAGATGGAA CCCAGGAAAG CACTATACAC TAAGTGTGGA ATAGCCCCGC TACCTTATTC
  CTGTAGGTCA AACGCACATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369716919	MGP_WTSI_6_113589641	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227530568					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369716919	MGP_WTSI_6_113589641	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113616608 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17852	CpG island 17852	877 bp distal
Gm43964	predicted gene, 43964	915 bp downstream
Irak2	interleukin-1 receptor-associated kinase 2	within coordinates
Rr399834	regulatory region 399834	1070 bp downstream
Rr636556	regulatory region 636556	1109 bp distal
Rr636557	regulatory region 636557	1257 bp distal
Rr636558	regulatory region 636558	1191 bp distal
Rr636559	regulatory region 636559	114 bp distal
Tssr58237	transcription start site region 58237	1103 bp downstream
Tssr62463	transcription start site region 62463	270 bp upstream