rs227533972 SNP Detail

Summary

• ID
  rs227533972
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:3548012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTACAGTG TCAATTGGCC
  ATTGGACTTC TAGGAACAGG AGAGGATATA AAAAGTCATC AGAGGAGAGA GGAGTAGGAC
  TGGGGAGTGG GGTCCAGGAG ACAGAGGAGT AGGGCCTGAG AAGACAGTTG ATGCAAGAAG
  AAAGAAGACT GTGTAGGGCT GGAGAAGAGA AGAGATTGAG CAGATTGAAA ATAAGAGACG
  S
  TTGAAAGTGA ATTGAACTGG CTGACTGAGA AGACTGTGGG TGGCAGCTGA GCCAGAAGAA
  GCTGAGCTGA GCCAGAAAAG ATGATGGTTA GGAGACAGAA AAAAGAGGAG GATCACAAAC
  AGTTTATAGG AAGAAGAGGC CCCATCCCCT GCTGGTCTAC ACGGATTTCT TGGCTGTTAA
  CTTCCCACAG ACTCTCCAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325087890	CHEV_16_3730148	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227533972					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:3548012 () rs orientation: forward

Symbol	Name	Function Class
Tdgf1-ps1	teratocarcinoma-derived growth factor, pseudogene 1	362 bp upstream
Tssr136822	transcription start site region 136822	118 bp downstream
Tssr136823	transcription start site region 136823	105 bp upstream