rs227544249 SNP Detail

Summary

• ID
  rs227544249
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123277756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGGTACT GGGGACAGGC
  TCTCTTCGCC TTTGGGTGCA AAAGAGGCAG AGGGGTCTGG AGAGCCCTAG TCCCCTCACC
  CACCCACTGC AATCGGCTGC CAAGCTCAAG CTCAAGAAAT CCCAGCTCCC AATCATCTGC
  AGCCCATGGC CTGCTCAATC GAGAGTTCCT CGAAGGGGGA AAAAGACACT TGAAAACAAA
  W
  TTTTTTAGTC TAGTTTTTTA CTTACCCACT CAGCCCGGCG CCATGGCGTC TAGAAGAAAA
  AGCTGGCCGG CGCTTTTGGA GATATTATAA AAATAACAGG TCTTTTTTTG GGAGGTGGGG
  GATGTTTGGT TGTTTAGTTG GGGGGAAACC TGGGGTTCTG GTGTCCCTTT GTTACCTTCT
  TTGTAAGTTA CACTCGTGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366533351	MGP_WTSI_5_123589702	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227544249					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366533351	MGP_WTSI_5_123589702	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123277756 () rs orientation: forward

Symbol	Name	Function Class
AI480526	expressed sequence AI480526	within coordinates
Cpgi16575	CpG island 16575	1773 bp distal
Cpgi16576	CpG island 16576	346 bp distal
Cpgi16577	CpG island 16577	1592 bp proximal
Gm38102	predicted gene, 38102	within coordinates
Rr367945	regulatory region 367945	1898 bp upstream
Rr378574	regulatory region 378574	within coordinates
Rr399342	regulatory region 399342	1531 bp upstream
Rr620111	regulatory region 620111	1145 bp distal
Rr620113	regulatory region 620113	670 bp distal
Rr620114	regulatory region 620114	448 bp distal
Rr620115	regulatory region 620115	within coordinates
Rr620116	regulatory region 620116	403 bp proximal
Rr620117	regulatory region 620117	1357 bp proximal
Tssr48762	transcription start site region 48762	1058 bp downstream
Tssr48763	transcription start site region 48763	983 bp downstream
Tssr48764	transcription start site region 48764	1531 bp upstream
Tssr48765	transcription start site region 48765	1736 bp upstream
Tssr53208	transcription start site region 53208	1953 bp upstream
Tssr53209	transcription start site region 53209	603 bp upstream
Tssr53210	transcription start site region 53210	276 bp downstream
Tssr53211	transcription start site region 53211	407 bp downstream
Tssr53212	transcription start site region 53212	442 bp downstream
Tssr53213	transcription start site region 53213	1018 bp downstream
Tssr53214	transcription start site region 53214	1386 bp downstream
Tssr53215	transcription start site region 53215	1587 bp downstream
Tssr53216	transcription start site region 53216	1651 bp downstream