rs227549359 SNP Detail

Summary

• ID
  rs227549359
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:30303764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTCTCACC CCCCCCCCCC
  CCGCTTCCAG CTTAAGAAAT CGGAGAGAAC TGGAAATGGG TAAGCTGGTG ACAGCACCTC
  TGGGGGAGGC TTCAGCCTCT GTGCTTTCTC TCCACTGTGG GGCGGTGGTG AGGGGCGTGG
  GTAGTGCTGC AGCAAGAGCG CTGAGTGGCC TGGCATGGAG GATGAGAGGT GGCAGAGAGA
  R
  GCAGGAAGAG GGAGTCCCGG AGACTCTGGA GGTGGCAGAA AGCAAGACAG GAAGGGCCCA
  GGCTGCTGGC ACAGTGGCAG GCAAGCGGCA GTAGCGCCAT TCCATACCTT CTCTCTCTGC
  TGCTCGTCCT CCATGGCAGG ACTGAGGATG TGAGCCCTGT CTGTCTGCCT GGGCTGGACC
  TCTAAGCCTA ACTGTGCTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353515379	MGP_WTSI_2_30269272	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227549359					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353515379	MGP_WTSI_2_30269272	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30303764 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11436	CpG island 11436			1339 bp proximal
Crat	carnitine acetyltransferase			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Gm16323	predicted gene 16323			within coordinates
Rr554310	regulatory region 554310			26 bp distal
Rr554311	regulatory region 554311			within coordinates
Rr554312	regulatory region 554312			932 bp proximal
Rr554313	regulatory region 554313			1762 bp proximal
Tssr17115	transcription start site region 17115			1866 bp upstream
Tssr23368	transcription start site region 23368			453 bp upstream
Tssr23369	transcription start site region 23369			352 bp downstream
Tssr23370	transcription start site region 23370			417 bp downstream
Tssr23371	transcription start site region 23371			1550 bp downstream
Tssr23372	transcription start site region 23372			1637 bp downstream
Tssr23373	transcription start site region 23373			1666 bp downstream
Tssr23374	transcription start site region 23374			1686 bp downstream
Tssr23375	transcription start site region 23375			1708 bp downstream
Tssr23376	transcription start site region 23376			1757 bp downstream
Tssr23377	transcription start site region 23377			1820 bp downstream
Tssr23378	transcription start site region 23378			1862 bp downstream
Tssr23379	transcription start site region 23379			1882 bp downstream