rs227555273 SNP Detail

Summary

• ID
  rs227555273
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:38300530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGGTTTC CCCCTCCCCC
  GAAGAGCAGG CGCCCTCCTC TCGGCTAGGC AGACCGTGAG TAGTCCTTGT CACCCCGGGT
  CGCATTCCTG GTGCAGACAG GGGCATCTCC CGCCAGAGCC AGGTGCAGGG CGCCCCCTCC
  ATCTAAACCG CGCTTCCAGG GAGACAGCCC CTCCAGCTCA CTCGTCTCCT GGGGTCTCCC
  Y
  GAGAGTCCTC CTTGTCTCCT GGATACCCAG GATCGCTCTC CCCTGGTCCA GGTCCCAGGC
  TTCTTCCGAC CCTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTGCACA TGCCCTCGAT
  GATATTCCAG CCTGCAGGGA GGAAATCCCT TGCAAGACCC CGCTGCAGCC TGGGTTCTCA
  GGCGTGGCTT ATTTAGGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss393693057	MGP_WTSI_15_38230041	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227555273					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss393693057	MGP_WTSI_15_38230041	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:38300530 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7049	CpG island 7049	within coordinates
Gm35248	predicted gene, 35248	within coordinates
Klf10	Kruppel-like transcription factor 10	within coordinates
Tssr4579	transcription start site region 4579	within coordinates
Tssr131113	transcription start site region 131113	920 bp downstream
Tssr131114	transcription start site region 131114	772 bp downstream
Tssr131115	transcription start site region 131115	106 bp upstream
Tssr131116	transcription start site region 131116	906 bp upstream
Tssr134124	transcription start site region 134124	593 bp upstream
Tssr134125	transcription start site region 134125	374 bp downstream
Tssr134126	transcription start site region 134126	407 bp downstream