rs227562567 SNP Detail

Summary

• ID
  rs227562567
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156194210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGTAGAC CAGGCTGGCC
  TCGAACTCAG AAATCCGCCT GTCTCTGCCT TCCAGTGCTG GGATTAAAGG CGTGCGCCCC
  GACACCCGGC TCCAGCTTTG AATTCTTTTG TGACCCTCTT GGAGCGAGGC GGACGTTACA
  CTCCATAGCC TTGCTTAGAA CCAAGGCCGG CCACCTAACA AGGACTACGA TGATTGGCCG
  Y
  CCCTAGAACT ATTGGGGAAT GTAGTCGTTT CCTTCCCTCC CTAGGCTCAA GTCCTCTTGG
  ACTACATTTC CCAGTCAGCG CTGGGAACGC AAACCCGCTG CCAGGACGGA ATCCTGGGTA
  AACGCACTTG GGCGAAGGGG CCGCTAGGAG TTGTAGTTTT TTTGCCCTCG CCACGGCCTG
  GGCGGGGGCG GGCCAGAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321445497	CHEV_4_155483862	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227562567					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156194210 () rs orientation: forward

Symbol	Name	Function Class
9430015G10Rik	RIKEN cDNA 9430015G10 gene	245 bp upstream
Cpgi15500	CpG island 15500	within coordinates
Gm69135	predicted gene, 69135	15 bp upstream
Rr398931	regulatory region 398931	within coordinates
Tssr40790	transcription start site region 40790	218 bp upstream
Tssr40791	transcription start site region 40791	260 bp upstream