rs227563731 SNP Detail

Summary

• ID
  rs227563731
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:50193072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAAACAG GAGGCTGCCT
  CTCAGGAGAA TGGATTTAGA GGGAAGACAA TGTGCTGCTA TGGGTTACAA GATGCCTGGA
  GGATATTCGT GTGTAATTGT CCAGCTAGTT GTTTGAAAGC GGGCTTATTG GATTCATGGA
  TTATGTGGAC GATGAGGGTT TGAGCATCAC TGAGACACAT GTAATTGTGA AGCTGTACCC
  H
  CCCCCCACCT TAATCTAGTG AAAGATGAGA GGCTTTGGAA ATAGAAACAA AAACTATGAA
  ACTTCTGAAA TCCATGTATG GATATTTTTA TAATTTTAAG GACATCTATT TTTCCCTCTA
  AGGAGAGGAC CCATATTCCT TCAAATTCTA TCCAAAGAGT CTATGCTTAC AGAGACACTA
  TAGACTCCTG GCAATGGTAA                                            
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss353923562	MGP_WTSI_2_50158580	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	T	A	A	C	A	T	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	C	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs227563731					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	T	A	A	C	A	T	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	C	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353923562	MGP_WTSI_2_50158580	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:50193072 () rs orientation: forward

Symbol	Name	Function Class
Gm13483	predicted gene 13483	within coordinates
Gm74801	predicted gene, 74801	within coordinates
Rr556732	regulatory region 556732	1875 bp proximal
Tssr17697	transcription start site region 17697	215 bp upstream