TTTGTTTAAG GCAATTCGTG TAAGCCAAGA GAAAGTGGCC TGATGGGATG GTAAAACGGG CATTTCAACC TAGGTAGCCC TTTAACCTCA ATACCAGCGT TGACTAGAAA ACAGCCTCTT GTTTTCGCTT CTTCTAGGCT TCCTTGGCTA TCAGGAAGCT ATGGCCTCAG CCGCCAGCAG GTGACGCCGA TGACGGGCAA W GAGTCCCAGC TGCCGCAATT ACCAAGGCTG AGGCGTCTCC TTTAAGAAGC TGACTCACGT GGATGCTGTG TTGTGTGCGC TCAGCTGGGA GTGGGGGGCG GGTCCTCACT CTCACTACAT TGGCCGCCTC GGCCGAGGAG GCAGACTTAG CCTCCTTGAT TGGCCGTAAG GATGCAAGGT GTCGAATTAG AGGCGGGGCG W = A/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss398976823 | MGP_WTSI_17_73185586 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | A | T | T | T | T | A | T | T | T | T | A | T | T | T | T | T | T | A | T | T | T | T | T | T | T | T | T | T | T |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs227575219 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | A | T | T | T | T | A | T | T | T | T | A | T | T | T | T | T | T | A | T | T | T | T | T | T | T | T | T | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss398976823 | MGP_WTSI_17_73185586 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/T |
Location: Chr17:73143241 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi9486 | CpG island 9486 | within coordinates | ||||||
Rr335920 | regulatory region 335920 | 1241 bp distal | ||||||
Rr340175 | regulatory region 340175 | within coordinates | ||||||
Rr405431 | regulatory region 405431 | 9 bp upstream | ||||||
Tssr5197 | transcription start site region 5197 | 91 bp upstream | ||||||
Tssr145775 | transcription start site region 145775 | 410 bp upstream | ||||||
Tssr145776 | transcription start site region 145776 | 432 bp upstream | ||||||
Tssr145777 | transcription start site region 145777 | 478 bp upstream | ||||||
Tssr145778 | transcription start site region 145778 | 1307 bp upstream | ||||||
Tssr145779 | transcription start site region 145779 | 1378 bp upstream | ||||||
Tssr145780 | transcription start site region 145780 | 1798 bp upstream | ||||||
Tssr149306 | transcription start site region 149306 | 1223 bp downstream | ||||||
Ypel5 | yippee like 5 | 382 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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