rs227576435 SNP Detail

Summary

• ID
  rs227576435
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75415211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAATTGTGT TGCTGGCTTC
  TGCTACTTCT TGTAGGGCTG TCTGGATTAT TTGTTAAGGC TGAAGGCCAT GCAAATGAAT
  GTCTCTACAT TTTGGAGGAA AGGTCCTGTC TACACAGGGA ATTCTTTTAA GCGACTGAAG
  CATATAGCCT CGAAGTATTG TACCATCTCT CAGCTTGTAT TCATTTAGAA CTGTCAGTCA
  R
  GCCCAGGACT GATGTTACAT ATACACTGTC CTGCACACAT GGTGAAAACC TGTGTTTCTA
  ACTGTTGGAA ACCACTCTAG CAGGACAACT TAAAACCAAA ATCAGAAGCA AGACAAACAA
  ACAAACAAAC AACAACAACA ACAAAAAACC AAAACAAGAA AAAGAAAAAA AAAGTGATGA
  CTTGTCAACA CACACCTTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391577284	MGP_WTSI_14_75577578	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227576435					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391577284	MGP_WTSI_14_75577578	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75415211 () rs orientation: forward

Symbol	Name	Function Class
Lcp1	lymphocyte cytosolic protein 1	within coordinates
Rr369874	regulatory region 369874	239 bp upstream
Rr404213	regulatory region 404213	789 bp downstream
Rr404214	regulatory region 404214	1920 bp upstream
Tssr4479	transcription start site region 4479	1962 bp downstream
Tssr126623	transcription start site region 126623	1166 bp downstream
Tssr126624	transcription start site region 126624	1128 bp downstream
Tssr126625	transcription start site region 126625	974 bp downstream
Tssr126626	transcription start site region 126626	949 bp downstream
Tssr126627	transcription start site region 126627	867 bp downstream
Tssr126628	transcription start site region 126628	617 bp downstream
Tssr126629	transcription start site region 126629	38 bp upstream
Tssr126630	transcription start site region 126630	77 bp upstream
Tssr126631	transcription start site region 126631	1807 bp upstream
Tssr129769	transcription start site region 129769	1168 bp upstream
Tssr129770	transcription start site region 129770	1089 bp upstream
Tssr129771	transcription start site region 129771	630 bp downstream
Tssr129772	transcription start site region 129772	1486 bp downstream