rs227578940 SNP Detail

Summary

• ID
  rs227578940
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:136374143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGAGCAGC GTGGGGGTGA
  GGGAGTCTTG GCTTTCAAAG TGAGGATCCC CAGATAAGGT TTCCTGGTCT TTCCTGAAGC
  AGGCCCTGCT CACCCACAGG TCTTGGCGTC CTTCCCTCTC TTCCAGCCAT CTGGCCAGGG
  ACCAGCTTCC CAAATCTGCC TTGGCAACTA GCTCTGCTCT AGCCCAGGAG GCTGTTTGCA
  R
  CAACCCCTAA CTGAGGAGAT TACAGAGTCC TCTTGTAGAT AATTTCATGT TCCCTGAAAA
  TTCCACTGGG CTATATAGAT CTTATTGAAA GCAAGGACCC TAGAGGTGGC AAATTTAGCA
  GCAGAAATCT GGCCACGAGG GCAGCCTCCC TTTGCGGATG GGATGTGACC ATCCACTCCA
  TCTCTCCTTT TGACTGGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359865469	MGP_WTSI_3_136331346	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227578940					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359865469	MGP_WTSI_3_136331346	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136374143 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13862	CpG island 13862	929 bp proximal
Gm56786	predicted gene, 56786	289 bp downstream
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform	1742 bp upstream
Rr398056	regulatory region 398056	1467 bp upstream
Rr585833	regulatory region 585833	within coordinates
Rr585834	regulatory region 585834	524 bp proximal
Rr585835	regulatory region 585835	911 bp proximal
Rr585836	regulatory region 585836	1531 bp proximal
Rr585837	regulatory region 585837	1898 bp proximal
Tssr31863	transcription start site region 31863	1694 bp upstream
Tssr31864	transcription start site region 31864	1806 bp upstream
Tssr31865	transcription start site region 31865	1836 bp upstream
Tssr31866	transcription start site region 31866	1874 bp upstream
Tssr31867	transcription start site region 31867	1898 bp upstream
Tssr35849	transcription start site region 35849	1510 bp downstream