rs227579399 SNP Detail

Summary

• ID
  rs227579399
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:76807106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCACCTTT ATTGCTTGGC
  TTTTTTTTTC CCCCAGAGAA AACTGCCTAT AAGAAAAAAG AAATTCAAGG CCAATTTTAA
  AAAGAAACAT TTGAAAATGT ATCTTGAATT GGTTATATGG TTGCATTATG CTAACTCATA
  AATGTGTGTG GGTGAGGGGT GGGGTCCTGC AATAAAACCT TATTATTTTT TTTTACTATT
  R
  TTTACTTAAA TTTTACTCCA AAGTTTTTGT TTAGAGTCAC CTGTGACAAT TGAGAGACTT
  TCAAGACTTT TCAATATAAA CAGAGCACTG AATTTGGAGC CAGGAAGGTA ATAGTGCTGA
  CATTAGAGTT AGGTAAAAAC AAAACTATAT GGTTCTTCAT AATCTACAAA CACTGTAACA
  GCAGAAGTTA TTACTGCTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365523406	MGP_WTSI_5_77088284	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227579399					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365523406	MGP_WTSI_5_77088284	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:76807106 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A730089K16Rik	RIKEN cDNA A730089K16 gene			904 bp upstream
Cpgi15996	CpG island 15996			773 bp distal
Cracd	capping protein inhibiting regulator of actin			Intron
				Noncoding-Transcript-Variant
Gm10430	predicted gene 10430			151 bp downstream
Rr613608	regulatory region 613608			919 bp distal
Rr613609	regulatory region 613609			223 bp distal
Tssr46728	transcription start site region 46728			1590 bp downstream
Tssr46729	transcription start site region 46729			1537 bp downstream
Tssr46730	transcription start site region 46730			1527 bp downstream
Tssr46731	transcription start site region 46731			1495 bp downstream
Tssr51429	transcription start site region 51429			923 bp upstream
Tssr51430	transcription start site region 51430			898 bp upstream
Tssr51431	transcription start site region 51431			867 bp upstream