rs227580275 SNP Detail

Summary

• ID
  rs227580275
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80557448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGGTTAG AATACCAGTT
  GGACAGCTGG CTGTGGGGTA GGTGAAAGAC TAATCTTTTC CTCTGTGCCC TTGGGTACTT
  GGGTAGTTTC CAGATAAAAT GTGGGCTATT GCATTAAATT CAAACTTCAA ATAGGTCTTT
  TTGTATCTTT TTATTCCAAA TAAGCTGCAC GGCGGCTGCA TTGATGCTAA AAGTGACTTT
  Y
  CATTTACCTA AATTCAGATT TAATGGGACA GATATTATTT TACCTTCTAA AGACTGAGAG
  GTGATAGACA TACTTTTATC CCATGCATGT ATTGTGTTTG GGGTGTCCTG GCACATATGG
  ATGTCAAAGG ACATCTTTGG GGAGTCTGTT CTCTCCTGCT ACCATGTATG TGGGTTCTTA
  AAGTTGAATG CAGGTAGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394704991	MGP_WTSI_15_80503677	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227580275					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394704991	MGP_WTSI_15_80503677	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80557448 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7376	CpG island 7376	811 bp distal
Fam83f	family with sequence similarity 83, member F	within coordinates
Rr506033	regulatory region 506033	1390 bp distal
Rr506034	regulatory region 506034	1110 bp distal
Rr506035	regulatory region 506035	239 bp distal
Rr506036	regulatory region 506036	280 bp proximal
Rr506037	regulatory region 506037	541 bp proximal
Rr506038	regulatory region 506038	1336 bp proximal
Tssr132233	transcription start site region 132233	1614 bp downstream
Tssr132234	transcription start site region 132234	1601 bp downstream
Tssr132235	transcription start site region 132235	1570 bp downstream
Tssr132236	transcription start site region 132236	1551 bp downstream
Tssr132237	transcription start site region 132237	1386 bp downstream