rs227588438 SNP Detail

Summary

• ID
  rs227588438
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153622690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    taggaattg agtgcagctc ctctgcggga
  gtttttaact gctgagccat ctctccagcc cTGCCAGGTC CCTTTCAAGG CCAATACAAT
  TCATATAGTT AACAGAAATG TACTTTAGAT ACACTTTTGC ATTAGGTTTC TGCCGTTTTC
  Y
  GTGGCTCTTT TTCCAGTACC ACATCCTGTC TCTTGTGTTT CCTTTTTCTA TTCTTTAAAT
  GTATCTATAC CCTAAGCTTA TGAGTCCTCA GATTTCTAGA GATTTGCGTT TTATTTCTAG
  ATGAGTCGTC ACAGCTTGCT TCATGCCCTC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320565084	CHEV_2_153606506	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227588438					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153622690 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12494	CpG island 12494	1416 bp distal
Efcab8	EF-hand calcium binding domain 8	within coordinates
Gm75501	predicted gene, 75501	1037 bp upstream
Rr567738	regulatory region 567738	1048 bp distal
Rr567739	regulatory region 567739	947 bp distal
Tssr20916	transcription start site region 20916	1535 bp downstream
Tssr20917	transcription start site region 20917	1519 bp downstream
Tssr20918	transcription start site region 20918	1491 bp downstream