rs227589832 SNP Detail

Summary

• ID
  rs227589832
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:103243578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGACGGC AAGGGAGAGC
  GGGAAAGGGC AGCGGGCCAA TTTCCTGCAA AGGTGACAAG CCTGGGCGAG GCTCGCTCGG
  GCCCCTAACT TCTCGTCGGT CGCCAGCGGC GGCTGCTTGG AGCGGGTGCT GCGAGCCGCC
  CGTGCCACCG CGGGGTGGCC AGAGGCGCCT GGGGCGCGCG GGAGCCTCGG GCGGGGGAGG
  Y
  GTCCGTACGG CGGCCAGCGG CGCCTTCGCA CCTCTGCAGC TTCGGCCGGG ACGCCAGCCG
  GCGCCCGCCG CGTGCCTACG TTTTCCCGCT CCCTCGGACG CGTGCCTCGG GCCGTGCCAC
  TTTCCCCAGA CGCCCGAGGT TCCCCCGGGG TCACCGAACC GATGGGAGGT GGCAGGCGGC
  TAGCGGCCGC TGCCCTGCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss404216940	MGP_WTSI_X_101395311	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs227589832					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404216940	MGP_WTSI_X_101395311	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:103243578 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22895	CpG island 22895	within coordinates
Nexmif	neurite extension and migration factor	within coordinates
Rr693074	regulatory region 693074	within coordinates
Rr693075	regulatory region 693075	1135 bp proximal
Tssr161734	transcription start site region 161734	873 bp upstream
Tssr163977	transcription start site region 163977	1127 bp downstream
Tssr163978	transcription start site region 163978	1154 bp downstream
Tssr163979	transcription start site region 163979	1206 bp downstream